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41906-86-9

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    Cas No: 41906-86-9

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41906-86-9 Usage

Description

NITROCEFIN is a chromogenic cephalosporin substrate that is commonly used to detect β-lactamases in bacteria. It is sensitive to hydrolysis by all known lactamases produced by both Gram-positive and Gram-negative bacteria. The presence of β-lactamase activity is indicated by a color change from yellow to red, which is proportional in intensity to the original concentration of nitrocefin.

Uses

Used in Antibiotic Resistance Detection:
NITROCEFIN is used as a detection agent for β-lactamase activity in bacteria, which is responsible for resistance to several classes of β-lactam antibiotics, including penicillins and cephalosporins. The color change from yellow to red as the amide bond in the β-lactam ring is hydrolyzed by β-lactamase helps in identifying the presence of β-lactamase activity.
Used in Bacterial Cell Extract Analysis:
NITROCEFIN is used as an analytical tool for the detection of β-lactamase activity from bacterial cell extracts through isoelectric focusing and spectroscopy. This helps in understanding the resistance mechanisms of bacteria to β-lactam antibiotics.
Used in β-lactamase Resistant Antibiotic Studies:
NITROCEFIN is used as a research tool in studies involving β-lactamase resistant antibiotics. The color change properties of NITROCEFIN allow for the evaluation of the effectiveness of these antibiotics against bacteria producing β-lactamases.
Used in Solution Preparation and Color Change Analysis:
NITROCEFIN is used in the preparation of solutions for the detection of β-lactamase activity. The yellow color of intact, undegraded nitrocefin indicates its presence before exposure to β-lactamase. The red color resulting from the β-lactamase-mediated cleavage of nitrocefin is used to confirm the presence of β-lactamase activity.

Preparation

Nitrocefin is a key reagent for high and low throughput assays of the activities of penicillin-binding proteins (PBPs) and β-lactamases, the former used for discovery of antibiotics and the latter for inhibitors of resistance determinants for β-lactam antibiotics. This compound is commercially available but is prohibitively expensive because of the circuitous routes to its synthesis. We describe herein a three-step synthesis of nitrocefin that gives an overall yield of 44%. This is a practical route to the synthesis of this key reagent for drug discovery.A Practical Synthesis of Nitrocefin

Biological Functions

In determination of b-lactamase activity in biological samples.Nitrocefin is a colorless or faint yellow cephalosporin antimicrobial that is hydrolyzed rapidly by most beta-lactamases.The hydrolysis product is pink.The bacterium to be tested is applied to a paper disk containing nitrocefin. A pink color developing within minutes (positive test) indicates a beta-lactamaseproducing bacterium.

Check Digit Verification of cas no

The CAS Registry Mumber 41906-86-9 includes 8 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 5 digits, 4,1,9,0 and 6 respectively; the second part has 2 digits, 8 and 6 respectively.
Calculate Digit Verification of CAS Registry Number 41906-86:
(7*4)+(6*1)+(5*9)+(4*0)+(3*6)+(2*8)+(1*6)=119
119 % 10 = 9
So 41906-86-9 is a valid CAS Registry Number.
InChI:InChI=1/C21H16N4O8S2/c26-16(9-14-2-1-7-34-14)22-17-19(27)23-18(21(28)29)12(10-35-20(17)23)4-3-11-5-6-13(24(30)31)8-15(11)25(32)33/h1-8,17,20H,9-10H2,(H,22,26)(H,28,29)/b4-3+/t17-,20-/m1/s1

41906-86-9SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 14, 2017

Revision Date: Aug 14, 2017

1.Identification

1.1 GHS Product identifier

Product name NITROCEFIN

1.2 Other means of identification

Product number -
Other names -

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:41906-86-9 SDS

41906-86-9Synthetic route

C34H26N4O8S2

C34H26N4O8S2

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
With methoxybenzene; trifluoroacetic acid In dichloromethane at 0℃; for 0.5h;87%
2-thienylacetic acid chloride
39098-97-0

2-thienylacetic acid chloride

(6R,7R)-7-Amino-3-[(E)-2-(2,4-dinitro-phenyl)-vinyl]-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid

(6R,7R)-7-Amino-3-[(E)-2-(2,4-dinitro-phenyl)-vinyl]-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
With N,N'-bis(trimethylsilyl)urea; ammonium bromide 1.) CH2Cl2, reflux, 1.5 h, 2.) CH2Cl2, -10 deg C, 1.5 h; Yield given. Multistep reaction;
(6R,7R)-3-[(Z)-2,4-dinitrostyryl]-7-(2-thienylacetamido)-3-cephem-4-carboxylic acid

(6R,7R)-3-[(Z)-2,4-dinitrostyryl]-7-(2-thienylacetamido)-3-cephem-4-carboxylic acid

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
In chloroform; dimethyl sulfoxide at 20℃; for 24h;120 mg
p-methoxybenzyl (6R,7R)-3-(2,4-dinitrostyryl)-7-(2-thienylacetamido)-3-cephem-4-carboxylate

p-methoxybenzyl (6R,7R)-3-(2,4-dinitrostyryl)-7-(2-thienylacetamido)-3-cephem-4-carboxylate

A

Nitrocefin
41906-86-9

Nitrocefin

B

(6R,7R)-3-[(Z)-2,4-dinitrostyryl]-7-(2-thienylacetamido)-3-cephem-4-carboxylic acid

(6R,7R)-3-[(Z)-2,4-dinitrostyryl]-7-(2-thienylacetamido)-3-cephem-4-carboxylic acid

Conditions
ConditionsYield
With methoxybenzene; trifluoroacetic acid In dichloromethane for 0.25h; cooling; Title compound not separated from byproducts;
2-thienylacetic acid chloride
39098-97-0

2-thienylacetic acid chloride

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: 78 percent / potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / 20 °C
2.1: sodium iodide / butan-2-one / 20 °C
3.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
3.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
4.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
View Scheme
Multi-step reaction with 5 steps
1.1: 78 percent / potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / 20 °C
2.1: sodium iodide / butan-2-one / 20 °C
3.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
3.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
4.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
5.1: 120 mg / CHCl3; dimethylsulfoxide / 24 h / 20 °C
View Scheme
(6R,7R)-4-methoxybenzyl-3-(chloromethyl)-8-oxo-7-(2-(thiophen-2-yl)acetamido)-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate
101182-25-6

(6R,7R)-4-methoxybenzyl-3-(chloromethyl)-8-oxo-7-(2-(thiophen-2-yl)acetamido)-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylate

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1.1: sodium iodide / butan-2-one / 20 °C
2.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
2.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
3.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
View Scheme
Multi-step reaction with 4 steps
1.1: sodium iodide / butan-2-one / 20 °C
2.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
2.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
3.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
4.1: 120 mg / CHCl3; dimethylsulfoxide / 24 h / 20 °C
View Scheme
para-methoxybenzyl (6R,7R)-7-amino-3-chloromethyl-3-cephem-4-carboxylate hydrochloride

para-methoxybenzyl (6R,7R)-7-amino-3-chloromethyl-3-cephem-4-carboxylate hydrochloride

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: 78 percent / potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / 20 °C
2.1: sodium iodide / butan-2-one / 20 °C
3.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
3.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
4.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
View Scheme
Multi-step reaction with 5 steps
1.1: 78 percent / potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / 20 °C
2.1: sodium iodide / butan-2-one / 20 °C
3.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
3.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
4.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
5.1: 120 mg / CHCl3; dimethylsulfoxide / 24 h / 20 °C
View Scheme
p-methoxybenzyl (6R,7R)-3-(2,4-dinitrostyryl)-7-(2-thienylacetamido)-3-cephem-4-carboxylate

p-methoxybenzyl (6R,7R)-3-(2,4-dinitrostyryl)-7-(2-thienylacetamido)-3-cephem-4-carboxylate

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
2: 120 mg / CHCl3; dimethylsulfoxide / 24 h / 20 °C
View Scheme
[(6R,7R)-2-(4-Methoxy-benzyloxycarbonyl)-8-oxo-7-(2-thiophen-2-yl-acetylamino)-5-thia-1-aza-bicyclo[4.2.0]oct-2-en-3-ylmethyl]-triphenyl-phosphonium; iodide

[(6R,7R)-2-(4-Methoxy-benzyloxycarbonyl)-8-oxo-7-(2-thiophen-2-yl-acetylamino)-5-thia-1-aza-bicyclo[4.2.0]oct-2-en-3-ylmethyl]-triphenyl-phosphonium; iodide

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
1.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
2.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
View Scheme
Multi-step reaction with 3 steps
1.1: potassium trimethylsilanolate / CH2Cl2; acetonitrile / 1 h / -10 °C
1.2: 0.90 g / CH2Cl2; acetonitrile / 5 h / -10 - 20 °C
2.1: trifluoroacetic acid; anisole / CH2Cl2 / 0.25 h / cooling
3.1: 120 mg / CHCl3; dimethylsulfoxide / 24 h / 20 °C
View Scheme
7-Aminocephalosporanic acid
957-68-6

7-Aminocephalosporanic acid

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 6 steps
1.1: water; sodium hydroxide / methanol / -20 - -10 °C
2.1: sodium hydroxide / acetone; water / 0 °C / pH 8
2.2: 0.5 h
3.1: phosphorus tribromide / tetrahydrofuran / -5 °C / Inert atmosphere
4.1: ethyl acetate / 15 h / 20 °C
5.1: sodium carbonate / dichloromethane / 2.5 h / 0 - 20 °C
6.1: methoxybenzene; trifluoroacetic acid / dichloromethane / 0.5 h / 0 °C
View Scheme
(6R,7R)-7-amino-3-hydroxymethyl-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid
15690-38-7

(6R,7R)-7-amino-3-hydroxymethyl-8-oxo-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1.1: sodium hydroxide / acetone; water / 0 °C / pH 8
1.2: 0.5 h
2.1: phosphorus tribromide / tetrahydrofuran / -5 °C / Inert atmosphere
3.1: ethyl acetate / 15 h / 20 °C
4.1: sodium carbonate / dichloromethane / 2.5 h / 0 - 20 °C
5.1: methoxybenzene; trifluoroacetic acid / dichloromethane / 0.5 h / 0 °C
View Scheme
3-hydroxymethyl-8-oxo-7-[(2-thienylacetyl)amino]-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid diphenylmethyl ester
29126-13-4

3-hydroxymethyl-8-oxo-7-[(2-thienylacetyl)amino]-5-thia-1-azabicyclo[4.2.0]oct-2-ene-2-carboxylic acid diphenylmethyl ester

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1: phosphorus tribromide / tetrahydrofuran / -5 °C / Inert atmosphere
2: ethyl acetate / 15 h / 20 °C
3: sodium carbonate / dichloromethane / 2.5 h / 0 - 20 °C
4: methoxybenzene; trifluoroacetic acid / dichloromethane / 0.5 h / 0 °C
View Scheme
(6R)-3-bromomethyl-8-oxo-7t-(2-thiophen-2-yl-acetylamino)-(6rH)-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid benzhydryl ester
30361-56-9

(6R)-3-bromomethyl-8-oxo-7t-(2-thiophen-2-yl-acetylamino)-(6rH)-5-thia-1-aza-bicyclo[4.2.0]oct-2-ene-2-carboxylic acid benzhydryl ester

Nitrocefin
41906-86-9

Nitrocefin

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: ethyl acetate / 15 h / 20 °C
2: sodium carbonate / dichloromethane / 2.5 h / 0 - 20 °C
3: methoxybenzene; trifluoroacetic acid / dichloromethane / 0.5 h / 0 °C
View Scheme
oxacillin bound N146K/E150K double mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

oxacillin bound N146K/E150K double mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

Nitrocefin
41906-86-9

Nitrocefin

nitrocefin complexed with oxacillin bound N146K/E150K double mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

nitrocefin complexed with oxacillin bound N146K/E150K double mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

Conditions
ConditionsYield
In aq. buffer at 20℃; for 0.166667h; pH=7; Kinetics;
oxacillin bound N146K/E150K/H351N triple mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

oxacillin bound N146K/E150K/H351N triple mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

Nitrocefin
41906-86-9

Nitrocefin

nitrocefin complexed with oxacillin bound N146K/E150K/H351N triple mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

nitrocefin complexed with oxacillin bound N146K/E150K/H351N triple mutant variant of penicillin binding protein 2a (residues 23-668) from staphylococcus aureus ATCC 700699

Conditions
ConditionsYield
In aq. buffer at 20℃; for 0.166667h; pH=7; Kinetics;
Nitrocefin
41906-86-9

Nitrocefin

C21H18N4O9S2

C21H18N4O9S2

Conditions
ConditionsYield
With β-lactamase Enzymatic reaction;

41906-86-9Downstream Products

41906-86-9Relevant articles and documents

Nitrocefin synthesis method

-

, (2017/04/08)

The invention relates to a nitrocefin synthesis method and belongs to the field of drug synthesis. The invention provides a novel process for preparing nitrocefin from a compound I as a raw material. The compound I is prepared from 7-ACA. The nitrocefin synthesis method can realize synthesis of nitrocefin from 7-ACA as an initial raw material through seven processes. The 7-ACA as an initial raw material is a key intermediate of a cephalosporin, has already been industrialized and has a low market price. The nitrocefin synthesis method has the advantages of simple processes, easy reaction treatment, easy product purification, high yield, easy industrialization and low production cost.

Synthesis of the β-lactamase indicators Cefesone and Nitrocefin

Barendse, Nico C. M. E.,Van Der Klein, Pieter A. M.,Verweij, Jan,Witkamp, Henk A.,Van Zoest, Wim J.,De Vroom, Erik

, p. 145 - 147 (2007/10/03)

The synthesis of the β-lactamase indicators Cefesone [(6R,7R)-3-(2,4- dinitrostyryl)-7-(phenylacetamido)ceph-3-em-4-carboxylic acid] and Nitrocefin [(6R,7R)-3-(2,4-dinitrostyryl)-7-(2-thienylacetamido)ceph-3-em-4-carboxylic acid] from tert-butyl (1S,6R,7R)-3-bromomethyl-1-oxo-7-(phenylacetamido)ceph- 3-em-4-carboxylate is reported. Phosphonylation of the latter compound with triphenylphosphine gave the corresponding phosphonium derivative in 93% yield. Reduction followed by Wittig coupling with 2,4-dinitrobenzaldehyde gave a 1:12 mixture of E- and Z-isomers in 83% yield. The tert-butyl protecting group was removed with titanium tetrachloride to give Cefesone as the pure crystalline E-isomer in 63% yield. De-acylation was achieved by enzymatic hydrolysis in 77% yield. Finally the 2-thienylacetyl side chain was introduced to give crystalline Nitrocefin in 67% yield.

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