612-05-5Relevant articles and documents
Synthesis and structural insights into the binding mode of the albomycin δ1 core and its analogues in complex with their target aminoacyl-tRNA synthetase
De Graef, Steff,Gadakh, Bharat,Nautiyal, Manesh,Pang, Luping,Strelkov, Sergei V.,Van Aerschot, Arthur,Vondenhoff, Gaston,Weeks, Stephen D.
, (2020/07/21)
Despite of proven efficacy and well tolerability, albomycin is not used clinically due to scarcity of material. Several attempts have been made to increase the production of albomycin by chemical or biochemical methods. In the current study, we have synthesized the active moiety of albomycin δ1 and investigated its binding mode to its molecular target seryl-trna synthetase (SerRS). In addition, isoleucyl and aspartyl congeners were prepared to investigate whether the albomycin scaffold can be extrapolated to target other aminoacyl-tRNA synthetases (aaRSs) from both class I and class II aaRSs, respectively. The synthesized analogues were evaluated for their ability to inhibit the corresponding aaRSs by an in vitro aminoacylation experiment using purified enzymes. It was observed that the diastereomer having the 5′S, 6′R-configuration (nucleoside numbering) as observed in the crystal structure, exhibits excellent inhibitory activity in contrast to poor activity of its companion 5′R,6′S-diasteromer obtained as byproduct during synthesis. Moreover, the albomycin core scaffold seems well tolerated for class II aaRSs inhibition compared with class I aaRSs. To understand this bias, we studied X-ray crystal structures of SerRS in complex with the albomycin δ1 core structure 14a, and AspRS in complex with compound 16a. Structural analysis clearly showed that diastereomer selectivity is attributed to the steric restraints of the active site of SerRS and AspRS.
Biosynthetic Origin of the Atypical Stereochemistry in the Thioheptose Core of Albomycin Nucleoside Antibiotics
Ushimaru, Richiro,Liu, Hung-Wen
supporting information, (2019/02/14)
Albomycins are peptidyl thionucleoside natural products that display antimicrobial activity against clinically important pathogens. Their structures are characterized by a thioheptose with atypical stereochemistry including a d-xylofuranose ring modified with a d-amino acid moiety. Herein it is demonstrated that AbmH is a pyridoxal 5′-phosphate (PLP)-dependent transaldolase that catalyzes a threo-selective aldol-type reaction to generate the thioheptose core with a d-ribofuranose ring and an l-amino acid moiety. The conversion of l-to d-amino acid configuration is catalyzed by the PLP-dependent epimerase AbmD. The d-ribo to d-xylo conversion of the thiofuranose ring appears according to gene deletion experiments to be mediated by AbmJ, which is annotated as a radical S-adenosyl-l-methionine (SAM) enzyme. These studies establish several key steps in the assembly of the thioheptose core during the biosynthesis of albomycins.
Simultaneous Conversion of C5 and C6 Sugars into Methyl Levulinate with the Addition of 1,3,5-Trioxane
Lyu, Xilei,Zhang, Zihao,Okejiri, Francis,Chen, Hao,Xu, Mai,Chen, Xujie,Deng, Shuguang,Lu, Xiuyang
, p. 4400 - 4404 (2019/09/09)
The simultaneous conversion of C5 and C6 mixed sugars into methyl levulinate (MLE) has emerged as a versatile strategy to eliminate costly separation steps. However, the traditional upgrading of C5 sugars into MLE is very complex as it requires both acid-catalyzed and hydrogenation processes. This study concerns the development of a one-pot, hydrogenation-free conversion of C5 sugars into MLE over different acid catalysts at near-critical methanol conditions with the help of 1,3,5-trioxane. For the conversion of C5 sugars over zeolites without the addition of 1,3,5-trioxane, the MLE yield is quite low, owing to low hydrogenation activity. The addition of 1,3,5-trioxane significantly boosts the MLE yield by providing an alternative conversion pathway that does not include the hydrogenation step. A direct comparison of the catalytic performance of five different zeolites reveals that Hβ zeolite, which has high densities of both Lewis and Br?nsted acid sites, affords the highest MLE yield. With the addition of 1,3,5-trioxane, the hydroxymethylation of furfural derivative and formaldehyde is a key step. Notably, the simultaneous conversion of C5 and C6 sugars catalyzed by Hβ zeolite can attain an MLE yield as high as 50.4 % when the reaction conditions are fully optimized. Moreover, the Hβ zeolite catalyst can be reused at least five times without significant change in performance.
